U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERX1904893: Illumina MiSeq sequencing; qiita_ptid_2362:10317.000060291
1 ILLUMINA (Illumina MiSeq) run: 24,491 spots, 3.7M bases, 2.7Mb downloads

Design: fecal, saliva, skin and environment samples from the American Gut Project
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: American Gut Project
show Abstracthide Abstract
The American Gut project is the largest crowdsourced citizen science project to date. Fecal, oral, skin, and other body site samples collected from thousands of participants represent the largest human microbiome cohort in existence. Detailed health and lifestyle and diet data associated with each sample is enabling us to deeply examine associations between the human microbiome and factors such as diet (from vegan to near carnivore and everything in between), season, amount of sleep, and disease states such as IBD, diabetes, or autism spectrum disorder-as well as many other factors not listed here. The American Gut project also encompasses the British Gut and Australian Gut projects, widening the cohort beyond North America. As the project continues to grow, we will be able to identify significant associations that would not be possible with smaller, geographically and health/disease status-limited cohorts.
Sample: qiita_sid_10317:10317.000060291
SAMEA93269668 • ERS1562474 • All experiments • All runs
Library:
Name: 10317.000060291
Instrument: Illumina MiSeq
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina MiSeq 515fbc, 806r amplification of 16SrRNA V4
Experiment attributes: (show all 31 attributes...) (hide...)
barcode: GTAAATTCAGGC
center_name: UCSDMI
center_project_name: AG33
experiment_center: UCSDMI
experiment_title: American Gut Project
extraction_robot: HOWE_KF1
extractionkit_lot: PM16G13
linker: GT
mastermix_lot: 396036
orig_name: 60291
pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
plating: LDG
primer: GTGTGYCAGCMGCCGCGGTAA
primer_date: 110716
primer_plate: 6
processing_robot: CARMEN
project_name: American_Gut_Project
run_center: UCSDMI
run_date: 12/05/16
run_prefix: RQ_3D_Mouse_2
samp_size: 0.1,g
sample_plate: American_Gut_Project_Plate_146
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
tm1000_8_tool: 108379Z
tm300_8_tool: 3076189
tm50_8_tool: 409172Z
water_lot: RNBF2734
well_description: American_Gut_Project_Plate_146_60291_C2
well_id: C2
Runs: 1 run, 24,491 spots, 3.7M bases, 2.7Mb
Run# of Spots# of BasesSizePublished
ERR184291624,4913.7M2.7Mb2017-02-21

ID:
3736599

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...